Quick Answer: What is the Bernalillo County Exclusion?

The Bernalillo County exclusion is a provision within the New Mexico Technology Jobs and R&D Tax Credit that limits the tax credit rate to 5% for qualified facilities located in Bernalillo County (the Albuquerque metropolitan area). This policy prevents these urban facilities from accessing the doubled 10% “rural area” incentive, effectively using tax policy to encourage the decentralization of technological investment into less-populated regions of the state.

Key Metrics:

  • Bernalillo County Rate: 5% Basic Credit + 5% Additional Credit (Total 10% Income Tax Offset).
  • Rural Area Rate: 10% Basic Credit + 10% Additional Credit (Total 20% Income Tax Offset).
  • Excluded Zones: Bernalillo, Doña Ana, and Santa Fe counties, Rio Rancho, and their 3-mile buffer zones.

In the context of the New Mexico Technology Jobs and Research and Development Tax Credit, the Bernalillo County exclusion refers to the statutory disqualification of the state’s most populous county from receiving the doubled “rural area” incentive rates, effectively capping credits at 5% of qualified expenditures. This geographical boundary ensures that the 10% premium rate is reserved for facilities in less-populated regions, thereby using tax policy to decentralize technological investment away from the Albuquerque metropolitan corridor.

The Statutory Genesis and Evolution of the Technology Jobs and Research and Development Tax Credit

The legislative intent behind the Technology Jobs and Research and Development Tax Credit Act, codified under NMSA §§ 7-9F-1 through 7-9F-13, is to cultivate a competitive fiscal environment for technology-based enterprises within New Mexico. Originally enacted in 2000 as the Technology Jobs Tax Credit Act, the program underwent a significant transformation in 2015 to include “Research and Development” in its title and to recalibrate the credit percentages to better align with contemporary economic needs. The 2015 amendments increased the basic and additional credit rates from 4% to 5% while introducing more rigorous definitions for qualified small businesses.

The purpose of the Act is dual-pronged: to incentivize the discovery of new information through experimentation and to promote the creation of high-wage employment opportunities in fields such as aerospace, biotechnology, and clean energy. By offering a credit against the state portion of Gross Receipts Tax (GRT), compensating tax, and withholding tax, the state effectively lowers the operational overhead for companies engaged in high-risk, high-reward innovation. However, the state’s developmental strategy recognizes that without geographical weighting, these high-tech jobs would naturally cluster in urban centers like Albuquerque, leaving the vast majority of the state’s rural acreage economically stagnant.

The Geographical Architecture of the Bernalillo County Exclusion

The “Bernalillo County Exclusion” is the primary mechanism through which New Mexico enforces its rural development goals. The distinction hinges upon the definition of a “rural area” versus a “non-rural area”. Under the guidance provided by the New Mexico Taxation and Revenue Department (TRD), most notably in FYI-106, the classification determines whether a taxpayer is eligible for the standard 5% credit or the doubled 10% “Rural Bonus”.

Defining the Boundaries of Exclusion

In the technical guidance issued by the TRD, a rural area is defined as any part of New Mexico that falls outside of specific metropolitan counties and their associated buffer zones. Bernalillo County, as the state’s economic engine, is the primary focus of this exclusion. For the purposes of the Technology Jobs and R&D Credit, the exclusion applies to:

  • The entirety of Bernalillo County.
  • Doña Ana County.
  • Santa Fe County.
  • The municipality of Rio Rancho.
  • A three-mile buffer zone surrounding the exterior boundaries of Bernalillo, Doña Ana, San Juan, and Santa Fe counties, as well as Rio Rancho.

This three-mile buffer is a critical legal detail. It prevents firms from setting up facilities just across the county line to capture the 10% rate while still drawing upon the workforce and specialized infrastructure of the Albuquerque metropolitan area. This ensures that the higher credit rate is only accessible to those truly expanding the state’s technological footprint into underserved regions.

Comparative Credit Rates by Location

Location Classification Key Counties/Cities Included Basic Credit Rate Additional Credit Rate
Non-Rural (Excluded) Bernalillo, Doña Ana, Santa Fe, Rio Rancho 5% 5%
Three-Mile Buffer Zone Within 3 miles of the above locations 5% 5%
Rural Area All other counties (e.g., Chaves, Eddy, Socorro) 10% 10%

The exclusion of Bernalillo County is rooted in its status as a Class A county with a high net taxable value. Because the county already hosts significant anchors like Sandia National Laboratories and the Air Force Research Laboratory (AFRL), the legislature determined that the “market pull” for technology jobs is already sufficiently strong in Albuquerque. Consequently, the 10% premium is leveraged to pull similar investments into Tier One and Tier Two rural areas.

Mechanics of the Basic Credit in Bernalillo County

The basic credit is the primary layer of the incentive, aimed at subsidizing the immediate costs of conducting research. For a facility located in Bernalillo County, the credit is equal to 5% of qualified expenditures.

Qualifying Research and the Four-Part Test

Eligibility for the credit is not automatic; the research must meet the stringent four-part test defined under NMSA 7-9F-3(I) and federal IRC § 41 standards.

  • Technological Nature: The research must fundamentally rely on principles of physical science, biological science, engineering, or computer science.
  • Permitted Purpose: The objective must be to develop a new or improved business component, focusing on performance, reliability, or quality.
  • Elimination of Uncertainty: The activity must be undertaken to discover information that resolves uncertainty regarding the capability or method of achieving a desired result.
  • Process of Experimentation: Substantially all activities must involve a systematic process of evaluating alternatives through trial and error, modeling, or simulation.

In Bernalillo County, where the aerospace and defense sectors are dominant, this test often applies to the development of satellite components, directed energy systems, and advanced aviation software.

Eligible Expenditures for Urban Facilities

Qualified expenditures encompass a broad range of costs associated with operating a research facility. For an Albuquerque-based firm, these costs include:

  • Personnel Costs: Wages and benefits paid to employees directly performing or supporting research.
  • Supplies: Tangible property, technical books, and manuals consumed in the research process.
  • Third-Party Services: Payments to New Mexico-based consultants and contractors.
  • Equipment and Software: Machinery, computer hardware, and software upgrades used primarily at the qualified facility.
  • Operational Costs: Rent and the allowable amount paid to maintain the facility (excluding land and buildings owned by a municipality or county through industrial revenue bonds).

The exclusion of local option gross receipts taxes from the basic credit’s reach is a vital administrative detail. Taxpayers may only apply the credit against the state’s portion of the GRT, which is currently set at 5.125%.

The Additional Credit: Driving Payroll Growth in the Metro Area

The additional credit provides a second 5% incentive (doubled to 10% in rural areas) specifically designed to reward companies that increase their workforce footprint. To claim this credit, a Bernalillo County business must meet a specific payroll benchmark.

The Payroll Growth Benchmark

To qualify for the additional 5% credit, the taxpayer must increase their annual payroll expense at the qualified facility by at least $75,000 for every $1,000,000 in qualified expenditures claimed in that tax year.

  • Base Payroll Expense: This is defined as the wages paid in the taxable year prior to the year for which the credit is claimed.
  • Verification: The increase is verified against unemployment insurance records and must represent a net growth in human capital investment that has not been previously used to qualify for the additional credit.

This benchmark is particularly impactful in the Bernalillo County tech cluster. Because the average wage for research and development in the physical, engineering, and life sciences in Albuquerque is significantly higher than the state average, a firm adding just one or two senior engineers can often easily surpass the $75,000 threshold.

Target Tax Liabilities

While the basic credit offsets GRT and withholding, the additional credit is specifically directed at income tax.

  • Corporate Income Tax (CIT): Applied to C-Corps conducting research.
  • Personal Income Tax (PIT): For pass-through entities like LLCs, S-Corps, and partnerships, the credit is distributed to the owners or members based on their percentage of ownership.

The 5% additional credit, when combined with the 5% basic credit, allows an Albuquerque-based firm to recover up to 10% of its total research investment through tax offsets. In a rural area like Carlsbad or Roswell, this total recovery doubles to 20%.

Small Business Provisions and Refundability Tiers

The 2015 overhaul of the Act introduced significant benefits for “Qualified Research and Development Small Businesses”. For startups in Bernalillo County, the most critical feature is the potential for the additional credit to be refunded in cash rather than just used as a carryforward.

Definition of a Qualified Small Business

To access the refundability provisions, a taxpayer must meet three criteria:

  1. Employee Cap: Employ no more than 50 employees as determined by unemployment insurance coverage.
  2. Expenditure Cap: Have total qualified expenditures of no more than $5,000,000 in the taxable year for which the additional credit is claimed.
  3. Ownership Independence: At least 50% of the voting securities or equity must not be owned by another business.

The Refund Mechanism

For large corporations, the additional credit is non-refundable and can only be used to offset actual income tax liability. However, for a small business in Bernalillo County that may still be in its pre-revenue or low-profit phase, the state allows a refund of excess additional credits.

Excess Credit Amount Percentage Refunded Impact on Cash Flow
<$3,000,000 100% of excess Provides immediate liquidity for payroll and R&D expansion.
$3,000,000 – $3,999,999 66.6% of excess Significant cash return with a portion retained for future offset.
$4,000,000 – $5,000,000 33.3% of excess Balanced approach for high-expenditure small firms.

This tiered system ensures that while the state supports startups, it manages its own fiscal risk for firms that are spending at the top end of the “small business” definition.

Administrative Compliance and TRD Guidance

Navigating the Bernalillo County exclusion and the broader R&D credit requires strict adherence to the New Mexico Taxation and Revenue Department’s administrative rules. The state employs a pre-approval process that is more rigorous than many federal counterparts.

The Two-Step Filing Process

The credit is not claimed directly on the initial tax return. Instead, it follows a structured lifecycle of application and claim.

  1. Application for Approval (Form RPD-41385): Taxpayers must submit this form within one year following the end of the calendar year in which the expenditure was made. An Albuquerque firm making expenditures in 2024 must file by December 31, 2025. This application includes project descriptions and detailed expense summaries.
  2. Claiming the Credit (Form RPD-41386): Once the TRD auditor approves the application and issues a certificate, the taxpayer uses the claim form to apply the credit against their tax return (e.g., the CIT-1 or PIT-1).

Reporting and Audit Obligations

Once a credit is claimed, the taxpayer enters a three-year “monitoring” phase. Claimants must file annual reports with the TRD by June 30 of each year following the claim and for the two subsequent years. Failure to submit these reports can jeopardize the credit or lead to a recapture of previously issued benefits.

The TRD also maintains the right to conduct post-approval audits. Companies are advised to maintain records for at least four years, including:

  • Project records and lab notes documenting the process of experimentation.
  • Payroll records verifying that research was performed at the Bernalillo County facility.
  • Itemized invoices for supplies and materials.

Economic Landscape: Bernalillo County vs. Rural Regions

The Bernalillo County exclusion is not merely a tax rule; it is a reflection of the county’s unique economic position within the Mountain West. Albuquerque serves as a hub for “Export-Based Industries,” which the state identifies as the primary target for the R&D credit.

The Aerospace and Defense Cluster

A significant portion of R&D credit activity in Bernalillo County is concentrated in the aerospace sector. Albuquerque is home to the Kirtland Air Force Base, which hosts the AFRL’s Space Vehicles and Directed Energy Directorates.

  • Budgetary Impact: The AFRL directorates have a combined budget exceeding $384 million, creating a massive “secondary market” of contractors and software developers.
  • Employment Trends: Growth in these clusters in Greater Albuquerque increased by 12.3% between 2018 and 2023, outperforming the national rate.

Because these firms are already drawn to Bernalillo County for its mission-critical infrastructure, the state legislature views the 5% credit as a “support” mechanism rather than a “primary attraction” mechanism.

Fiscal Performance Statistics

The LFC’s 2025 assessment provides a snapshot of the credit’s performance statewide. While the report does not provide a perfect county-by-county breakdown, the concentration of tech firms in the Rio Grande corridor suggests that Bernalillo County accounts for a substantial share of the following FY24 figures:

Metric FY24 Assessment Data
Total State Expenditure $11.2 Million
Total Number of Claims 390
Economic ROI 92% (92 cents growth per $1 spent)
Jobs Supported 165 per year
Average Cost Per Job $35,000

The 125% increase in expenditures in FY24 indicates a sharp rise in technological activity, likely driven by the post-pandemic expansion of remote-capable tech work and the resurgence of defense spending.

Interactions with Local Bernalillo County Taxes

While the Technology Jobs and R&D Credit is a state-level incentive, it operates within the specific local tax environment of Bernalillo County. Businesses must understand how these layers interact to calculate their true net benefit.

Property Tax and Business Personal Property

Firms conducting research in Albuquerque must report their business personal property (BPP) to the Bernalillo County Assessor. This includes the very same equipment and software that may qualify for the R&D tax credit.

  • Valuation: Non-residential properties in Bernalillo County do not have a 3% valuation cap, making annual assessments a variable cost for growing tech firms.
  • Abatements: Companies may seek property tax abatements of up to 95% through Industrial Revenue Bonds (IRBs) issued by the City of Albuquerque. However, as noted in the R&D Act, expenditures on property owned by a municipality in connection with an IRB are excluded from the definition of “qualified expenditure” to prevent “double-dipping” into state and local incentives.

Gross Receipts Tax (GRT) Nuances

Bernalillo County has one of the higher GRT rates in the state due to local option taxes. Because the R&D credit only applies to the state portion of the GRT (excluding local options), a firm in Albuquerque will still have a residual tax liability for the municipal and county portions of the GRT even if their credit exceeds their state-level debt.

Comprehensive Case Study: Albuquerque vs. Belen

To illustrate the financial impact of the Bernalillo County exclusion, consider a hypothetical software company, “Nexus-Dev,” which is deciding between locating its new research facility in downtown Albuquerque (Bernalillo County) or in Belen (Valencia County).

Scenario A: The Albuquerque Facility (Excluded)

Nexus-Dev invests $2,000,000 in a research project in 2024.

  • Qualified Expenditures: $2,000,000 (Software licenses, high-end server equipment, and engineer wages).
  • Payroll Growth: The company adds three engineers, increasing payroll by $300,000 over the 2023 base.
  • Basic Credit: $2,000,000 × 5% = $100,000
  • Additional Credit: Since $300,000 > ($75,000 × 2), the company qualifies for the additional credit. $2,000,000 × 5% = $100,000
  • Total State Tax Relief: $200,000.

Scenario B: The Belen Facility (Rural Bonus)

Belen is located more than three miles from the Bernalillo County line and is considered a rural area.

  • Qualified Expenditures: $2,000,000.
  • Payroll Growth: $300,000.
  • Basic Credit: $2,000,000 × 10% = $200,000
  • Additional Credit: $2,000,000 × 10% = $200,000
  • Total State Tax Relief: $400,000.

In this case, Nexus-Dev gains an additional $200,000 in tax benefits by choosing the rural location. However, management must weigh this against Albuquerque’s proximity to the “Sandia Science & Technology Park,” superior internet infrastructure, and the ease of recruiting talent who may prefer to live in a class A metropolitan area.

Complementary Incentives in the Bernalillo Region

The Technology Jobs and R&D Credit is often just one part of a “stack” of incentives used by Bernalillo County firms. Understanding these related programs helps clarify the broader context of state business support.

The New Mexico Small Business Assistance (NMSBA) Program

Created in 2000, the NMSBA (also known as the Laboratories Partnership with Small Business Tax Credit) allows national laboratories like Sandia to provide technical expertise to small businesses at no cost to the business.

  • Mechanism: The lab receives a tax credit for the value of the services provided.
  • Geographic Variation: The credit for the lab is $10,000 per business, but this doubles to $20,000 for a business located in a rural area.
  • Bernalillo Context: Many Albuquerque startups utilize NMSBA to “de-risk” their technology before applying for the Technology Jobs R&D Credit for their internal development.

The High-Wage Jobs Tax Credit

For companies adding high-paying roles in Bernalillo County, this credit provides 8.5% of the total value of wages and benefits for each new job.

  • The Albuquerque Threshold: To qualify as “high-wage” in Bernalillo County, the job must pay at least $60,000 per year.
  • The Rural Threshold: In rural areas, the requirement drops to $40,000.
  • Refundability: Like the R&D credit, the excess of this credit is refundable, providing a dual stream of cash to tech firms.

Challenges and Future Outlook

The Technology Jobs and R&D Credit does not currently have an expiration date, signaling a long-term commitment by the state to support the innovation economy. However, the LFC has noted potential areas for future study, including whether the credit could be more effective by differentiating based on specific emerging demographics rather than just geography.

Audit Risks and Documentation Standards

One of the primary challenges for Bernalillo County firms is the “audit-ready” requirement. The TRD’s focus on verifying “in-state work” means that companies utilizing remote contractors from outside New Mexico must be careful to allocate only the NM-sourced expenditures to their claim. As remote work remains a staple of the tech industry, the “qualified facility” requirement becomes a more complex legal hurdle, as the research must be conducted at the facility to qualify.

Impact of 2025 Regulatory Changes

While there are no major statutory changes to the R&D credit slated for 2025, the state’s transition to a single annual GRT rate change (only in July) will simplify the calculation of credit offsets for firms that previously had to manage mid-year rate shifts. Furthermore, the ongoing impact of federal tax changes, such as the Section 174 amortization requirements for R&D expenses, makes the state-level credit even more vital as a cash-flow “bridge” for New Mexico firms.

Final Thoughts

The Bernalillo County exclusion represents a sophisticated intersection of tax policy and economic geography. By limiting metropolitan facilities to a 5% credit rate, New Mexico acknowledges the inherent competitive advantages of its urban core while aggressively incentivizing regional diversification. For businesses within Bernalillo County, the credit serves as a robust 5% to 10% subsidy that supports the high costs of innovation, especially through its unique refundability provisions for small enterprises.

The local revenue office guidance emphasizes a “pre-approval first” mentality, requiring companies to be meticulous in their documentation of the four-part test and their payroll growth. While the “rural bonus” in neighboring counties offers a tantalizing 20% total benefit, the density of talent and federal lab infrastructure in the Albuquerque area ensures that Bernalillo County remains the undisputed center of New Mexico’s technology sector. For firms operating in this environment, the strategic layering of the Technology Jobs and R&D Credit with local IRBs and High-Wage Job incentives creates one of the most favorable tax climates for research and development in the United States. Future success for these entities will depend on their ability to navigate the complex buffer-zone rules and maintain the rigorous reporting standards required to preserve their eligibility for these lucrative state supports.

Who We Are:

Swanson Reed is one of the largest Specialist R&D Tax Credit advisory firm in the United States. With offices nationwide, we are one of the only firms globally to exclusively provide R&D Tax Credit consulting services to our clients. We have been exclusively providing R&D Tax Credit claim preparation and audit compliance solutions for over 30 years. Swanson Reed hosts daily free webinars and provides free IRS CE and CPE credits for CPAs.

Are you eligible?

R&D Tax Credit Eligibility AI Tool

Why choose us?

R&D tax credit

Pass an Audit?

R&D tax credit

What is the R&D Tax Credit?

The Research & Experimentation Tax Credit (or R&D Tax Credit), is a general business tax credit under Internal Revenue Code section 41 for companies that incur research and development (R&D) costs in the United States. The credits are a tax incentive for performing qualified research in the United States, resulting in a credit to a tax return. For the first three years of R&D claims, 6% of the total qualified research expenses (QRE) form the gross credit. In the 4th year of claims and beyond, a base amount is calculated, and an adjusted expense line is multiplied times 14%. Click here to learn more.

Never miss a deadline again

R&D tax credit

Stay up to date on IRS processes

Discover R&D in your industry

R&D Tax Credit Preparation Services

Swanson Reed is one of the only companies in the United States to exclusively focus on R&D tax credit preparation. Swanson Reed provides state and federal R&D tax credit preparation and audit services to all 50 states.

If you have any questions or need further assistance, please call or email our CEO, Damian Smyth on (800) 986-4725.
Feel free to book a quick teleconference with one of our national R&D tax credit specialists at a time that is convenient for you.

R&D Tax Credit Audit Advisory Services

creditARMOR is a sophisticated R&D tax credit insurance and AI-driven risk management platform. It mitigates audit exposure by covering defense expenses, including CPA, tax attorney, and specialist consultant fees—delivering robust, compliant support for R&D credit claims. Click here for more information about R&D tax credit management and implementation.

Our Fees

Swanson Reed offers R&D tax credit preparation and audit services at our hourly rates of between $195 – $395 per hour. We are also able offer fixed fees and success fees in special circumstances. Learn more at https://www.swansonreed.com/about-us/research-tax-credit-consulting/our-fees/

R&D Tax Credit Training for CPAs

R&D tax credit

Upcoming Webinars

R&D Tax Credit Training for CFPs

bigstock Image of two young businessmen 521093561 300x200

Upcoming Webinars

R&D Tax Credit Training for SMBs

water tech

Upcoming Webinars